Pathogens

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
Influenza A virus (H1N1) Influenza A virus (A\WSN\1933(H1N1)) 382835 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus Virus

Influenza A virus (H1N1)

NCBI Taxonomy ID:382835
PrimerBankID Target Gene Year of Publication
RPB0332 H1N1 2025
RPB0380 HA 2023
RPB0381 NA 2023
RPB0411 N gene 2023
RPB0417 H1N1 HA1 N gene 2023
RPB0418 H1N1 HN1 N gene 2023
Influenza A virus (H9N2) Influenza A virus (A\chicken\Yunnan\Baoshan2\2007(H9N2)) 479038 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus Virus

Influenza A virus (H9N2)

NCBI Taxonomy ID:479038
PrimerBankID Target Gene Year of Publication
RPB0289 HA 2024
RPB0290 HA gene 2024
RPB0322 M gene 2025
Human bocavirus 1 Human bocavirus 1,Human bocaparvovirus 1,Human bocavirus type 1 689403 Piccovirales Parvoviridae Bocaparvovirus Bocaparvovirus primate1 Viruses

Human bocavirus 1

NCBI Taxonomy ID:689403
PrimerBankID Target Gene Year of Publication
RPB0401 NP1 2024
SARS-CoV SARS-CoV 694009 Nidovirales Coronaviridae Betacoronavirus Severe acute respiratory syndrome-related coronavirus Severe acute respiratory syndrome-related coronavirus

SARS-CoV

NCBI Taxonomy ID:694009
PrimerBankID Target Gene Year of Publication
RPB0046 SARS-CoV S gene 2021
Aspergillus fumigatus Aspergillus fumigatus, Sartorya fumigata, Neosartorya fumigata 746128 Eurotiales Aspergillaceae Aspergillus Aspergillus fumigatus Fungus

Aspergillus fumigatus

NCBI Taxonomy ID:746128
PrimerBankID Target Gene Year of Publication
RPB0084 \ 2022
RPB0349 Beta-tubulin gene 2024
Bordetella pertussis CS Bordetella pertussis CS, Bordetella pertussis str. CS, Bordetella pertussis strain CS 1017264 Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis Bacterium

Bordetella pertussis CS

NCBI Taxonomy ID:1017264
PrimerBankID Target Gene Year of Publication
RPB0340 IS1663 gene 2024
RPB0400 IS1663 gene 2023
Mycobacterium avium subsp. paratuberculosis (ATCC 19698) Mycobacterium avium subsp. paratuberculosis 1074454 Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Bacterium

Mycobacterium avium subsp. paratuberculosis (ATCC 19698)

NCBI Taxonomy ID:1074454
PrimerBankID Target Gene Year of Publication
RPB0184 IS900 gene 2016
Acinetobacter baumannii Acinetobacter baumannii, Acinetobacter genomosp. 2, Bacterium anitratum 1096995 Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Bacterium

Acinetobacter baumannii

NCBI Taxonomy ID:1096995
PrimerBankID Target Gene Year of Publication
RPB0168 Acinetobacter baumannii BJAB07104(429756-429939) 2017
RPB0169 Acinetobacter baumannii BJAB07104(599665-599840) 2017
Klebsiella pneumoniae Klebsiella pneumoniae, Bacillus pneumoniae, Hyalococcus pneumoniae 1244085 Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Bacterium

Klebsiella pneumoniae

NCBI Taxonomy ID:1244085
PrimerBankID Target Gene Year of Publication
RPB0175 Klebsiella pneumoniae CG43(2388833-2389025) 2017
RPB0176 Klebsiella pneumoniae CG43(2398713-2398848) 2017
MERS-CoV Middle East respiratory syndrome-related coronavirus, MERS coronavirus, MERS virus, Middle East Respiratory Syndrome Coronavirus, Middle East respiratory syndrome coronavirus 1335626 Nidovirales Coronaviridae Betacoronavirus Nidovirales Virus

MERS-CoV

NCBI Taxonomy ID:1335626
PrimerBankID Target Gene Year of Publication
RPB0039 NC gene 2013
RPB0040 N gene 2023
RPB0041 N gene 2021
RPB0042 E gene 2021
RPB0043 RdRP gene 2021
RPB0044 MERS-CoV E gene 2021
RPB0047 MERS-CoV UpE gene 2021
RPB0048 MERS-CoV N gene 2021
RPB0108 UpE 2021
RPB0109 N gene 2021
RPB0416 N gene 2023
RPB0434 ORF1a 2023
RPB0435 upE 2023
RPB0436 ORF1b 2023
HAdV Human adenovirus 1907210 Rowavirales Adenoviridae Mastadenovirus Human adenovirus Virus

HAdV

NCBI Taxonomy ID:1907210
PrimerBankID Target Gene Year of Publication
RPB0088 \ 2021
RPB0089 \ 2021
RPB0090 \ 2021
RPB0091 \ 2021
RPB0092 \ 2021
RPB0170 HAdV 41 2016
RPB0230 Hexon protein gene 2024
RPB0236 HAdV B 1A(E1A)gene 2024
RPB0419 AdvB AdvE 2023
RPB0422 \ 2023
RPB0423 \ 2023
SARS-CoV-2 SARS-CoV-2, 2019-nCoV, COVID-19, COVID-19 virus, SARS2, Wuhan coronavirus, Human coronavirus 2019, COVID19, HCoV-19, SARS-2, SARS-CoV4 2697049 Nidovirales Coronaviridae Betacoronavirus Severe acute respiratory syndrome-related coronavirus virus

SARS-CoV-2

NCBI Taxonomy ID:2697049
PrimerBankID Target Gene Year of Publication
RPB0001 N 2023
RPB0002 ORF1ab 2023
RPB0003 N 2023
RPB0004 N 2023
RPB0005 S 2023
RPB0009 ORF1a_L 2023
RPB0010 ORF1a_S 2023
RPB0011 N1_L 2023
RPB0012 N1_S 2023
RPB0013 ORF1ab 2023
RPB0014 N 2023
RPB0015 ORF1ab 2023
RPB0016 E 2023
RPB0017 N 2023
RPB0018 S 2023
RPB0019 N 2023
RPB0020 N 2023
RPB0021 N 2023
RPB0022 E 2023
RPB0023 ORF1ab 2023
RPB0027 ORF1ab 2023
RPB0028 N 2023
RPB0030 S(containing the L452R mutation site) 2022
RPB0031 S 2022
RPB0032 ORF1ab 2022
RPB0033 ORF1ab 2022
RPB0034 N 2022
RPB0035 S 2022
RPB0036 ORF1ab 2022
RPB0037 S 2022
RPB0038 ORF1ab 2022
RPB0045 SARS-CoV S gene 2021
RPB0051 ORF1ab gene C9866T 2023
RPB0052 S gene A23040G 2023
RPB0053 ORF7b gene G27788T 2023
RPB0054 M gene G26529A 2023
RPB0055 S gene C27889T 2023
RPB0056 \ 2023
RPB0057 N gene 2019
RPB0058 N gene 2021
RPB0059 E gene 2020
RPB0060 Orf1ab gene 2020
RPB0061 RdRp 2021
RPB0062 RdRp and Ngene 2021
RPB0063 RdRp gene 2021
RPB0064 E gene 2021
RPB0065 N gene 2021
RPB0066 ORF1ab gene 2021
RPB0067 N gene 2021
RPB0068 N gene 2021
RPB0069 ORF1ab gene 2021
RPB0070 N gene 2022
RPB0071 N gene 2021
RPB0072 ORF1ab 2020
RPB0073 N gene 2020
RPB0074 S gene 2020
RPB0075 N gene 2020
RPB0076 \ 2020
RPB0077 ORF1ab and N gene 2020
RPB0078 N gene 2020
RPB0079 N gene 2020
RPB0110 \ 2021
RPB0196 O-gene 2022
RPB0197 N-gene 2022
RPB0198 Orf1ab-gene 2022
RPB0199 N-gene 2022
RPB0200 E gene 2022
RPB0201 RdRP gene 2022
RPB0202 \ 2022
RPB0203 SARS-Cov-2 N gene 2022
RPB0204 Orf1ab-gene 2022
RPB0205 N-gene 2022
RPB0206 CYP2C19*2 2022
RPB0207 CYP2C19*3 2022
RPB0208 A570D 2022
RPB0209 D80A 2022
RPB0210 T473K 2022
RPB0211 \ 2022
RPB0212 S gene 2021
RPB0213 nucleocapsid phosphoprotein gene 2021
RPB0214 ORF8 protein gene 2021
RPB0215 N gene 2021
RPB0216 S gene 2021
RPB0217 N gene 2021
RPB0218 RdRP gene 2021
RPB0222 CPSIT_0429 2024
RPB0223 D614G 2024
RPB0224 R346T 2024
RPB0225 Q183E 2024
RPB0226 T1050N 2024
RPB0233 \ 2024
RPB0234 Nucleocapsid N3 gene 2024
RPB0240 SARS-CoV-2 N gene 2024
RPB0247 (N) gene 2024
RPB0252 R346T 2024
RPB0253 F486V;49X 2024
RPB0256 ORF1ab 2025
RPB0264 S gene 2024
RPB0292 N gene 2025
RPB0303 E gene 2024
RPB0304 N gene 2024
RPB0305 RdRP gene 2024
RPB0306 Omicron variant BA.1 2024
RPB0307 Omicron variant BA.2 2024
RPB0309 orflab gene 2024
RPB0310 N gene 2024
RPB0315 orflab gene 2024
RPB0323 N gene 2025
RPB0324 ORF1ab gene 2025
RPB0325 ORF1ab gene 2025
RPB0326 N gene 2025
RPB0331 ORF1ab gene 2025
RPB0338 N gene 2024
RPB0339 N gene 2024
RPB0357 RNase P gene 2023
RPB0358 S gene 2023
RPB0359 S gene 2023
RPB0360 S gene 2023
RPB0361 S gene 2023
RPB0362 ORF1ab gene 2023
RPB0363 N gene 2023
RPB0367 N gene 2023
RPB0370 S gene 2023
RPB0371 ORF1ab gene 2023
RPB0372 N gene 2023
RPB0373 Spike gene 2023
RPB0391 BbsI 2023
RPB0392 XbaI 2023
RPB0393 M gene 2023
RPB0394 E gene 2023
RPB0395 N gene 2023
RPB0396 ORF1ab gene 2023
RPB0399 N gene 2023
RPB0405 RdRp 2023
RPB0406 N gene 2023
RPB0407 ORF1ab 2023
RPB0408 E 2023
RPB0409 S 2023
RPB0410 ORF1ab gene 2023
RPB0413 S gene 2023
RPB0414 N gene 2023
RPB0415 E gene 2023
RPB0425 N 2023
RPB0426 S gene 2023
RPB0433 E gene 2023
RPB0437 N 2023
RPB0438 RdRP 2023
RPB0439 WPRE 2023
RPB0440 S gene 2023
RPB0441 ORF1ab gene 2023
RPB0442 N gene 2023
RPB0444 N gene 2023
RPB0445 S gene 2023
RPB0446 H69V70Del 2023
RPB0447 K417N 2023
RPB0448 H655Y 2023
RPB0449 T478K 2023
RPB0450 49X 2023