Pathogens

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
HCoV-NL63 Human coronavirus NL63, Coronavirus NL63, Human coronavirus NL 27794 Nidovirales Coronaviridae Alphacoronavirus Human coronavirus NL63 Virus

HCoV-NL63

NCBI Taxonomy ID:27794
PrimerBankID Target Gene Year of Publication
RPB0171 N-gene 2022
HCoV-OC43 Human coronavirus OC43, Human coronavirus (strain OC43), Human coronavirus strain OC43 31631 Nidovirales Coronaviridae Betacoronavirus Betacoronavirus 1 virus

HCoV-OC43

NCBI Taxonomy ID:31631
PrimerBankID Target Gene Year of Publication
RPB0007 \ 2023
RPB0257 ORF1ab 2025
CVA16 Coxsackievirus A16, Coxsackie A virus type 16, CVA16, CV-A16 31704 Picornavirales Picornaviridae Enterovirus Enterovirus A Virus

CVA16

NCBI Taxonomy ID:31704
PrimerBankID Target Gene Year of Publication
RPB0379 VP4 gene 2023
RPB0535 CVA16 VP4 2023
RPB0536 CVA10 VP1 2023
EV-A71 Enterovirus 71, Enterovirus EV-A71, Human enterovirus 71, Human enterovirus A71, Human enterovirus type 71, enterovirus type 71 39054 Picornavirales Picornaviridae Enterovirus Enterovirus A Virus

EV-A71

NCBI Taxonomy ID:39054
PrimerBankID Target Gene Year of Publication
RPB0087 VP1 gene 2018
RPB0378 VP1 gene 2023
RPB0496 VP1 2019
RPB0534 EV71 VP1 2023
Stenotrophomonas maltophilia Stenotrophomonas maltophilia, Pseudomonas maltophilia, Xanthomonas maltophilia 40324 Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia Bacterium

Stenotrophomonas maltophilia

NCBI Taxonomy ID:40324
PrimerBankID Target Gene Year of Publication
RPB0272 \ 2024
RPB0293 N gene 2024
Pneumocystis jirovecii Pneumocystis jirovecii 42068 Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis jirovecii Fungus

Pneumocystis jirovecii

NCBI Taxonomy ID:42068
PrimerBankID Target Gene Year of Publication
RPB0248 5.8 S ribosomal RNA 2024
RPB0280 mtSSU rRNA gene 2025
Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv, Mycobacterium tuberculosis str. H37Rv, Mycobacterium tuberculosis strain H37Rv 83332 Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Bacterium

Mycobacterium tuberculosis H37Rv

NCBI Taxonomy ID:83332
PrimerBankID Target Gene Year of Publication
RPB0288 16S rRNA M. smegmatis gene 2025
RPB0365 IS1081 gene 2023
Coxsackievirus A6 CV-A6,CVA-6,,CVA6,Coxsackie A virus type 6,Enterovirus CA6,Human coxsackievirus A6,Human enterovirus CVA6 86107 Picornavirales Picornaviridae Enterovirus Enterovirus A Viruses

Coxsackievirus A6

NCBI Taxonomy ID:86107
PrimerBankID Target Gene Year of Publication
RPB0085 VP1 gene 2021
RPB0537 CVA6 VP1 2023
Influenza A virus (H5N1) Influenza A virus( A/chicken/Egypt/1273CA/2012) 102793 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus Virus

Influenza A virus (H5N1)

NCBI Taxonomy ID:102793
PrimerBankID Target Gene Year of Publication
RPB0174 Influenza A virus (H5N1) 2015
Influenza A virus (H1N1) Influenza A virus (H1N1) 114727 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus virus

Influenza A virus (H1N1)

NCBI Taxonomy ID:114727
PrimerBankID Target Gene Year of Publication
RPB0024 M 2023
RPB0029 M1 2023
RPB0353 HA gene 2024
RPB0385 M gene 2023
Influenza A virus (H3N2) Influenza A virus (H3N2) 119210 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus virus

Influenza A virus (H3N2)

NCBI Taxonomy ID:119210
PrimerBankID Target Gene Year of Publication
RPB0025 HA 2023
Nipah virus Nipah henipavirus 121791 Mononegavirales Paramyxoviridae Henipavirus Nipah virus Virus

Nipah virus

NCBI Taxonomy ID:121791
PrimerBankID Target Gene Year of Publication
RPB0352 N gene 2024
RPB0384 N gene 2023
RPB0443 Nucleocapsid protein (N) gene 2023
Streptococcus pyogenes M1 GAS Streptococcus pyogenes M1 GAS, Streptococcus pyogenes SF370, Streptococcus pyogenes ATCC 700294 160490 Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Bacterium

Streptococcus pyogenes M1 GAS

NCBI Taxonomy ID:160490
PrimerBankID Target Gene Year of Publication
RPB0244 sdaB gene 2024
RPB0321 speB 2024
HMPV Human metapneumovirus 162145 Mo\gavirales Pneumoviridae Metapneumovirus Human metapneumovirus Virus

HMPV

NCBI Taxonomy ID:162145
PrimerBankID Target Gene Year of Publication
RPB0094 N gene 2021
RPB0235 nucleoprotein (N) gene 2024
RPB0262 F 2025
HRV Human rhinovirus 169066 Picornavirales Picornaviridae Enterovirus Human rhinovirus Virus

HRV

NCBI Taxonomy ID:169066
PrimerBankID Target Gene Year of Publication
RPB0095 VP4 2022
RPB0364 VP4 gene 2023
HRSV A Human respiratory syncytial virus A, Respiratory syncytial virus group A 208893 Mononegavirales Pneumoviridae Orthopneumovirus Human orthopneumovirus Virus

HRSV A

NCBI Taxonomy ID:208893
PrimerBankID Target Gene Year of Publication
RPB0260 M 2025
RPB0347 \ 2024
RPB0424 \ 2023
HRSV B Human respiratory syncytial virus B, Respiratory syncytial virus group B 208895 Mononegavirales Pneumoviridae Orthopneumovirus Human orthopneumovirus Virus

HRSV B

NCBI Taxonomy ID:208895
PrimerBankID Target Gene Year of Publication
RPB0348 \ 2024
HCoV-NL63 Human coronavirus NL63, Coronavirus NL63, Human coronavirus NL 277944 Nidovirales Coronaviridae Alphacoronavirus Human coronavirus NL63 virus

HCoV-NL63

NCBI Taxonomy ID:277944
PrimerBankID Target Gene Year of Publication
RPB0008 \ 2023
RPB0093 N-gene 2022
RPB0258 ORF1ab 2025
HCoV-HKU1 Human coronavirus HKU1, CoV-HKU1 290028 Nidovirales Coronaviridae Betacoronavirus Human coronavirus HKU1 Virus

HCoV-HKU1

NCBI Taxonomy ID:290028
PrimerBankID Target Gene Year of Publication
RPB0259 ORF1ab 2025
Influenza A virus (H7N9) Influenza A virus (H7N9) 333278 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus Virus

Influenza A virus (H7N9)

NCBI Taxonomy ID:333278
PrimerBankID Target Gene Year of Publication
RPB0101 HA gene 2018
RPB0102 NA gene 2018