Pathogens

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
Pseudomonas aeruginosa Pseudomonas aeruginosa, Bacterium aeruginosum, Bacillus aeruginosus 287 Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Bacterium

Pseudomonas aeruginosa

NCBI Taxonomy ID:287
PrimerBankID Target Gene Year of Publication
RPB0124 oprL gene 2023
RPB0125 lasB 2021
RPB0186 lasB 2017
RPB0187 tuf 2015
RPB0188 \ 2017
RPB0189 \ 2017
RPB0219 oprD gene 2024
RPB0220 arr gene 2024
RPB0228 lasB gene 2024
RPB0249 mexX gene 2024
RPB0268 lasB gene 2024
RPB0271 \ 2024
RPB0277 \ 2024
RPB0279 oprL gene 2024
RPB0335 Ecf X 2025
RPB0366 \ 2023
RPB0429 Eta 2023
Legionella pneumophila Legionella pneumophila 446 Legionellales Legionellaceae Legionella Legionella pneumophila Bacterium

Legionella pneumophila

NCBI Taxonomy ID:446
PrimerBankID Target Gene Year of Publication
RPB0106 mip gene 2022
RPB0107 5S rRNA gene 2022
RPB0178 16S rRNA 2018
Acinetobacter baumannii Acinetobacter baumannii, Acinetobacter genomosp. 2, Bacterium anitratum 470 Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Bacterium

Acinetobacter baumannii

NCBI Taxonomy ID:470
PrimerBankID Target Gene Year of Publication
RPB0080 bla OXA-51 2022
RPB0081 bla OXA-23 2022
RPB0082 blaOXA-51 2020
RPB0083 bla OXA-23 2020
RPB0269 \ 2024
RPB0350 OXA-51 2024
RPB0351 OXA-23 2024
Klebsiella pneumoniae Klebsiella pneumoniae, Bacillus pneumoniae, Hyalococcus pneumoniae 573 Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Bacterium

Klebsiella pneumoniae

NCBI Taxonomy ID:573
PrimerBankID Target Gene Year of Publication
RPB0103 rmpA2 2022
RPB0104 khe 2020
RPB0105 blaNDM-1 2020
RPB0177 khe 2017
RPB0227 khe gene 2024
RPB0238 blaKPC gene 2024
RPB0239 blaNDM gene 2024
RPB0245 P1 gene 2024
RPB0250 rcsA gene 2024
RPB0251 rcsA gene 2025
RPB0270 \ 2024
RPB0283 rcsA gene 2024
RPB0284 KPC gene 2024
RPB0286 rcsA gene 2025
RPB0297 KPC gene 2024
RPB0298 NDM gene 2024
RPB0299 OXA gene 2024
RPB0300 IMP gene 2024
RPB0301 VIM gene 2024
RPB0302 blaKPC gene 2024
RPB0317 khe gene 2024
RPB0318 blaKPC-2 gene 2024
RPB0319 blaNDM-1gene 2024
RPB0327 KPC 2024
RPB0328 NDM 2024
RPB0329 K.pneumoniae 2024
RPB0336 groEL 2025
RPB0374 peg344 gene 2023
RPB0375 rmpA gene 2023
RPB0402 bla KPC 2023
RPB0428 CelB 2023
Haemophilus influenzae Haemophilus influenzae, Bacterium influenzae, Mycobacterium influenzae, Influenza-bacillus, Coccobacillus pfeifferi, Haemophilus meningitidis 727 Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Bacterium

Haemophilus influenzae

NCBI Taxonomy ID:727
PrimerBankID Target Gene Year of Publication
RPB0096 omp6 2022
RPB0097 bexA 2022
RPB0274 \ 2024
RPB0337 16srRNA 2025
RPB0430 Fuck 2023
Coxiella burnetii  Coxiella burnetii: ATCC:VR-615 777 Legionellales Coxiellaceae Coxiella Coxiella burnetii Bacterium

Coxiella burnetii 

NCBI Taxonomy ID:777
PrimerBankID Target Gene Year of Publication
RPB0086 23S rRNA gene 2018
Staphylococcus aureus Staphylococcus aureus, Micrococcus aureus, Staphylococcus pyogenes aureus 1280 Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus Bacterium

Staphylococcus aureus

NCBI Taxonomy ID:1280
PrimerBankID Target Gene Year of Publication
RPB0130 clfA 2023
RPB0131 mecA 2023
RPB0132 nuc gene 2023
RPB0133 blaZ 2023
RPB0134 mecA 2023
RPB0135 ermA 2023
RPB0136 ermB 2023
RPB0137 ermC 2023
RPB0138 msrA 2023
RPB0139 tetK 2023
RPB0140 tetM 2023
RPB0141 aadD 2023
RPB0142 nuc 2023
RPB0143 blaZ 2023
RPB0144 mecA 2023
RPB0145 ermA 2023
RPB0146 ermB 2023
RPB0147 ermC 2023
RPB0148 msrA 2023
RPB0149 tetK 2023
RPB0150 tetM 2023
RPB0151 aadD 2023
RPB0152 nuc 2023
RPB0153 nuc 2023
RPB0154 mecA 2023
RPB0155 nuc 2023
RPB0156 nuc 2022
RPB0157 mecA 2022
RPB0158 mecA gene 2022
RPB0159 nuc gene 2020
RPB0160 mecA 2022
RPB0161 ermA 2022
RPB0162 mecA 2022
RPB0163 nuc 2022
RPB0164 \ 2021
RPB0190 \ 2017
RPB0191 \ 2017
RPB0192 \ 2017
RPB0193 cfb 2015
RPB0194 mecA 2014
RPB0195 orfX 2014
RPB0241 nuc gene 2024
RPB0242 mecA gene 2024
RPB0246 nuc gene 2025
RPB0266 pvl 2024
RPB0267 clfA 2024
RPB0273 \ 2024
RPB0276 nuc gene 2024
RPB0278 \ 2024
RPB0285 nuc gene 2025
RPB0308 mecA gene 2025
RPB0314 nuc gene 2024
RPB0316 nuc gene 2025
RPB0320 nuc gene 2024
RPB0330 nuc gene 2024
RPB0333 nuc gene 2025
RPB0334 mecA gene 2025
RPB0356 nuc gene 2023
RPB0412 vicK gene 2023
RPB0427 Nuc 2023
Streptococcus pneumoniae Streptococcus pneumoniae, Micrococcus pneumoniae, Diplococcus pneumoniae 1313 Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Bacterium

Streptococcus pneumoniae

NCBI Taxonomy ID:1313
PrimerBankID Target Gene Year of Publication
RPB0165 lytA 2022
RPB0275 \ 2024
Streptococcus pyogenes Streptococcus pyogenes 1314 Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Bacterium

Streptococcus pyogenes

NCBI Taxonomy ID:1314
PrimerBankID Target Gene Year of Publication
RPB0166 speB 2018
RPB0167 SIP 2018
RPB0221 sepB 2024
RPB0511 sdaB 2024
Mycobacterium Mycobacterium 1763 Corynebacteriales Mycobacteriaceae Mycobacterium 0 Bacterium

Mycobacterium

NCBI Taxonomy ID:1763
PrimerBankID Target Gene Year of Publication
RPB0112 rpsl gene 2022
RPB0113 rpoB 2021
RPB0114 katG 2021
RPB0115 inhA 2021
RPB0116 Ag85B 2021
RPB0117 IS1081 2020
RPB0263 rpoB gene 2025
RPB0390 CARDS 2023