RPB0266

Pathogen Description

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
Staphylococcus aureus Staphylococcus aureus, Micrococcus aureus, Staphylococcus pyogenes aureus 1280 Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus Bacterium

Primer Description

Primer Name Sequence(5'-3') Length(bp) Primer Final Concentration(μM) GC Content(%) Predicted Melting Temperature(℃) Molecular Weight(g/moles) Positions in GenBank accession number
pvl-F GGCTCAAGACAAAGCAACTTAAATGCTGGA 30 10 μM 43.33 61.07 9257.11 \
pvl-R GCAGCGTTTTGTTTTCGAGATAGGACACCA 30 10 μM 46.67 62.69 9237.06 \

Gene Description

Target Gene GenBank ID
pvl \

Assay Description

Application Assay Primer Designing Software Reaction Time(min) Assay Temperature(℃) Readout System(s) Limit of Detection(LoD) Sensitivity(%) Specificity(%)
a precise identification and highly sensitive detection method for pvl-positive S. aureus based on recombinase-assisted amplification and the CRISPR-ERASE strip which we previously developed. RAA-CRISPR-ERASE primer5 30 min 39°C CRISPR-ERASE detection 1 copy/μL 1 copy/μL 1

Publication Description

Year of Publication Title Author(s) Journal PMID DOI
2024 Detection of Staphylococcus aureus virulence gene pvl based on CRISPR strip Li Jin,XiaoFeng Hu,Yuan Tian,MengYa Fang,Xue Dong,YaXuan Jiang,Yao Han,Hao Li,Yansong Sun Frontiers in Immunology 38524136 10.3389/fimmu.2024.1345532

Detection of Staphylococcus aureus virulence gene pvl based on CRISPR strip

Author(s):

Li Jin,XiaoFeng Hu,Yuan Tian,MengYa Fang,Xue Dong,YaXuan Jiang,Yao Han,Hao Li,Yansong Sun

Journal:

Frontiers in Immunology

Year:

2024

Abstract:

Introduction:Staphylococcus aureus (S. aureus) is a prominent pathogen responsible for both hospital-acquired and community-acquired infections. Among its arsenal of virulence factors, Panton-Valentine Leucocidin (PVL) is closely associated with severe diseases such as profound skin infections and necrotizing pneumonia. Patients infected with pvl-positive S. aureus often exhibit more severe symptoms and carry a substantially higher mortality risk. Therefore, it is crucial to promptly and accurately detect pvl-positive S. aureus before initiating protective measures and providing effective antibacterial treatment. Methods: In this study, we propose a precise identification and highly sensitive detection method for pvl-positive S. aureus based on recombinase-assisted amplification and the CRISPR-ERASE strip which we previously developed. Results: The results revealed that this method achieved a detection limit of 1 copy/μL for pvl-positive plasmids within 1 hour. The method successfully identified all 25 pvl-positive and 51 pvl-negative strains among the tested 76 isolated S. aureus samples, demonstrating its concordance with qPCR. Discussion: These results show that the CRISPR-ERASE detection method for pvl-positive S. aureus has the advantages of high sensitivity and specificity, this method combines the characteristics of recombinase-assisted amplification at room temperature and the advantages of ERASE test strip visualization, which can greatly reduce the dependence on professional laboratories. It is more suitable for on-site detection than PCR and qPCR, thereby providing important value for rapid on-site detection of pvl.