Pathogens

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
Mycobacterium avium subsp. Paratuberculosis type strain of Mycobacterium avium subsp. paratuberculosis: ATCC:19698, CIP:103963, DSM:44133 1770 Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Bacterium

Mycobacterium avium subsp. Paratuberculosis

NCBI Taxonomy ID:1770
PrimerBankID Target Gene Year of Publication
RPB0123 IS900 2018
Mycobacterium tuberculosis Mycobacterium tuberculosis, Bacterium tuberculosis, Bacillus tuberculosis, Mycobacterium tuberculosis variant tuberculosis 1773 Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Bacterium

Mycobacterium tuberculosis

NCBI Taxonomy ID:1773
PrimerBankID Target Gene Year of Publication
RPB0119 IS6110 2019
RPB0120 IS1081 2019
RPB0121 IS6110 2018
RPB0122 katG 2018
RPB0180 IS6110 2014
RPB0181 IS1081 2014
RPB0182 16S rRNA 2018
RPB0183 IS1081 2017
RPB0185 tuf 2015
RPB0237 IS6110 genes 2024
RPB0265 IS6110 gene 2024
RPB0281 IS6110 2025
RPB0282 IS1081 2025
RPB0287 IS10181 gene 2024
RPB0354 IS1081 2023
RPB0355 IS6110 2023
RPB0376 IS6110 2023
RPB0377 IS1081 2023
RPB0397 IS6110 2023
RPB0398 IS1081 2023
Mycobacterium ulcerans type strain of Mycobacterium ulcerans: ATCC:19423, NCTC:10417 1809 Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans group Bacterium

Mycobacterium ulcerans

NCBI Taxonomy ID:1809
PrimerBankID Target Gene Year of Publication
RPB0118 IS2404 2019
Mycoplasma pneumoniae Mycoplasma pneumoniae, Schizoplasma pneumoniae, Mycoplasmoides pneumoniae 2104 Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma pneumoniae Bacterium

Mycoplasma pneumoniae

NCBI Taxonomy ID:2104
PrimerBankID Target Gene Year of Publication
RPB0432 \ 2023
HCoV-229E Human coronavirus 229E, Coronavirus 229E 11137 Nidovirales Coronaviridae Alphacoronavirus Human coronavirus 229E virus

HCoV-229E

NCBI Taxonomy ID:11137
PrimerBankID Target Gene Year of Publication
RPB0006 \ 2023
HPIV-3 Human respirovirus 3, Human parainfluenza 3 virus, Human parainfluenza virus 3, Human parainfluenza virus type 3, Parainfluenza virus type 3, human parainfluenza virus 3 HPIV3, human parainfluenza virus type 3 PIV3, parainfluenza virus type 3 PIV-3 11216 Mononegavirales Paramyxoviridae Respirovirus Human respirovirus 3 Virus

HPIV-3

NCBI Taxonomy ID:11216
PrimerBankID Target Gene Year of Publication
RPB0261 M 2025
Measles morbillivirus Measles morbillivirus, Cell-associated subacute sclerosing panencephalitis, Measles virus, Subacute sclerosing panencephalitis virus, measles virus MV, rougeole virus rubeola virus, subacute sclerose panencephalitis virus, subacute sclerosing panencephalitis virus, SSPEV 11234 Mo\gavirales Paramyxoviridae Morbillivirus Measles morbillivirus Virus

Measles morbillivirus

NCBI Taxonomy ID:11234
PrimerBankID Target Gene Year of Publication
RPB0111 \ 2021
RPB0243 N region 2024
RPB0497 Meas_NS1, Meas_NR1 2024
Influenza A virus Influenza A virus, FLUAV, Human Influenza A Virus, Influenza virus type A 11320 Articulavirales Orthomyxoviridae Alphainfluenzavirus Influenza A virus Virus

Influenza A virus

NCBI Taxonomy ID:11320
PrimerBankID Target Gene Year of Publication
RPB0098 matrix gene 2018
RPB0099 H1 2018
RPB0100 H3 2018
RPB0172 \ 2015
RPB0173 \ 2015
RPB0231 \ 2024
RPB0232 \ 2024
RPB0254 PB1 2025
RPB0291 \ 2025
RPB0294 HA gene 2024
RPB0295 M2 gene 2024
RPB0296 Nucleprotein (NP) gene 2024
RPB0312 M1 gene 2024
RPB0341 HA gene 2024
RPB0342 HA gene 2024
RPB0343 HA gene 2024
RPB0344 HA gene 2024
RPB0345 HA gene 2024
RPB0346 HA gene 2024
RPB0368 Matrix gene 2023
RPB0382 HA 2023
RPB0383 NA 2023
RPB0386 M gene 2023
RPB0387 NP gene 2023
RPB0388 M gene 2023
RPB0389 M gene 2023
RPB0403 HA 2023
RPB0404 NA 2023
RPB0420 HA 2023
RPB0421 HA gene 2023
RPB0431 HA gene 2023
Influenza B virus Influenza B virus, FLUBV, Influenza virus type B 11520 Articulavirales Orthomyxoviridae Betainfluenzavirus Influenza B virus virus

Influenza B virus

NCBI Taxonomy ID:11520
PrimerBankID Target Gene Year of Publication
RPB0026 PA 2023
RPB0255 PB1 2025
RPB0313 NS1 gene 2024
RPB0369 NS gene 2023
RSV A/B Respiratory syncytial virus, Respiratory syncytial virus RS, respiratory syncytial virus RS virus, Respiratory syncytial virus RSV 12814 Mo\gavirales Pneumoviridae Orthopneumovirus Bovine orthopneumovirus Virus

RSV A/B

NCBI Taxonomy ID:12814
PrimerBankID Target Gene Year of Publication
RPB0049 UTR gene 2020
RPB0050 N gene 2019
RPB0126 \ 2022
RPB0127 \ 2022
RPB0128 conserved L gene 2020
RPB0129 (N) gene 2019
RPB0229 N protein gene 2024
RPB0311 F gene 2024