RPB0287

Pathogen Description

Target Pathogen Pathogen Name NCBI Taxonomy ID Order Family Genus Species Pathogen type
Mycobacterium tuberculosis Mycobacterium tuberculosis, Bacterium tuberculosis, Bacillus tuberculosis, Mycobacterium tuberculosis variant tuberculosis 1773 Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Bacterium

Primer Description

Primer Name Sequence(5'-3') Length(bp) Primer Final Concentration(μM) GC Content(%) Predicted Melting Temperature(℃) Molecular Weight(g/moles) Positions in GenBank accession number
Forward-RPA CCAAGCTGCGCCAGGGCAGCTATTT 25 10 µM 60 67.3 7643.01 \
Reverse-RPA TTGGCCATGATCGACACTTGCGA 23 10 μM 52.17 61.71 7039.63 \

Gene Description

Target Gene GenBank ID
IS10181 gene \

Assay Description

Application Assay Primer Designing Software Reaction Time(min) Assay Temperature(℃) Readout System(s) Limit of Detection(LoD) Sensitivity(%) Specificity(%)
novel, rapid, sensitive and low-cost fluorescent and visual detection platform for TB diagnosis RPA-CHA-assisted dual signal amplification \ 20 mins 39°C CHA-assisted dual signal amplification fluorescence:0.13 amol L-1and visual analysis0.33 amol L-1 \ \

Publication Description

Year of Publication Title Author(s) Journal PMID DOI
2024 Fluorescent and colorimetric dual-readout platform for tuberculosis point-of-care detection based on dual signal amplification strategy and quantum dot nanoprobe Ou Hu,Yingyu Gong,Yuexiang Chang,Yaoju Tan,Zuanguang Chen,Wei Bi,Zhengjin Jiang Biosensors and Bioelectronics 39167885 10.1016/j.bios.2024.116641

Fluorescent and colorimetric dual-readout platform for tuberculosis point-of-care detection based on dual signal amplification strategy and quantum dot nanoprobe

Author(s):

Ou Hu,Yingyu Gong,Yuexiang Chang,Yaoju Tan,Zuanguang Chen,Wei Bi,Zhengjin Jiang

Journal:

Biosensors and Bioelectronics

Year:

2024

Abstract:

Rapid and accurate diagnosis of tuberculosis (TB) is of great significance to control the spread of this devastating infectious disease. In this work, a sensitive and low-cost point-of-care testing (POCT) detection platform for TB was developed based on recombinase polymerase amplification (RPA)-catalytic hairpin assembly (CHA)-assisted dual signal amplification strategy. This platform could achieve homogeneous fluorescent and visual diagnosis of TB by using CdTe quantum dots (QDs) signal reporter. In the presence of target DNA (IS1081 gene fragment), RPA amplicons blocked by short oligonucleotide strands could trigger CHA signal amplification, leading to the Ag+ releasing from C-Ag+-C structure and the fluorescence quenching of CdTe QDs by the released Ag+. Furthermore, the detection performance of CdTe QDs modified by 3-mercaptopropionic acid (MPA) or thiomalic acid (TMA) (MPA-capped QDs and TMA-capped QDs) was systematically compared. Experimental results demonstrated that TMA-capped QDs exhibited better detection sensitivity due to their stronger interaction with Ag+. The limits of detection (LODs) of fluorescence and visual analysis were as low as 0.13 amol L-1 and 0.33 amol L-1. This method was successfully applied to the clinical sputum samples from 36 TB patients and 20 healthy individuals, and its quantitative results were highly consistent with those obtained by real-time fluorescent quantitative polymerase chain reaction (RT-qPCR). The proposed approach has the advantages of high sensitivity and specificity, simple operation and low cost, and is expected to be applied in clinical TB screening and diagnosis.