Primers

PrimerBankID Primer Name Sequence(5'-3') Target Pathogen Target Gene GenBank Year of Publication Pathogen type
RPB0107 nLep-RPA-R2 5′-Digoxin-CTGGCGATGACCTACTTTCGCATGAGGAAG-3′ Legionella pneumophila 5S rRNA gene NR_075178.1 2022 Bacterium
RPB0107 nLep-RPA-P2 5′-FAM-CCTGATACCATCTCGAACTCAGAAGTGAAACATTT[THF]CCGCGCCAATG-C3-Spacer Legionella pneumophila 5S rRNA gene NR_075178.1 2022 Bacterium
RPB0108 UpE-Fa TTAGCCTAGTTTCTGTAACTGACTTCTCCT MERS-CoV UpE JX869059 2021 Virus
RPB0108 UpE-Rb Biotin-GTTCGTTTTCCATATGTCCAAAGAGAGAC MERS-CoV UpE JX869059 2021 Virus
RPB0108 UpE-Pc FITC-GCGATTCAGTTCCTCTTCACATAATCGCCCCGAGC(THF)CGCTTATCG-C3 Spacer MERS-CoV UpE JX869059 2021 Virus
RPB0109 N-Fa Biotin-CCCTTGAGTCTGGCAAAGTAAAGCAATCGC MERS-CoV N gene JX869059 2021 Virus
RPB0109 N-Rb AGGAGCAAGCTCAGCAATTTGGGGCCAACGTG MERS-CoV N gene JX869059 2021 Virus
RPB0109 N-P FITC-AGCAATTTGGGGCCAACGTGGGTCCTCAGT(THF)CCGAGTTTATTCAAT-C3 Spacer MERS-CoV N gene JX869059 2021 Virus
RPB0110 CoV-RPA-F ATACACTAATTCTTTCACACGTGGTGTTTA SARS-CoV-2 \ \ 2021 virus
RPB0110 CoV-RPA-R AGTAGCGTTATTAACAATAAGTAGGGACTGGG SARS-CoV-2 \ \ 2021 virus
RPB0111 MV-RPA-F AGAATAATGAAGAAGGGGGAGACTATTATGA Measles morbillivirus \ \ 2021 Virus
RPB0111 MV-RPA-R CAGCAGCAGCTGTCCTCTGGAACTGGTCCG Measles morbillivirus \ \ 2021 Virus
RPB0112 rpsl RPA-F2 TCAGTAAGGTCAAGACCGCGGCTCTGAAGGGC Mycobacterium rpsl gene \ 2022 Bacterium
RPB0112 rpsl RPA-R1 CCTGTTTGCGGTTCTTGACACCCTGCGTATCCAGCG Mycobacterium rpsl gene \ 2022 Bacterium
RPB0113 rpoB RPA F3 TGGCCCGCGTCGGTCGCTATAAGGTCAACAAGA Mycobacterium rpoB \ 2021 Bacterium
RPB0113 rpoB RPA R4 AGGTGAGCACGTCCTCTTCGACCAGGCGGTTGGA Mycobacterium rpoB \ 2021 Bacterium
RPB0114 katG RPA F1 GGCTCCAGCACGGCAAAGGATTCCACGTCG Mycobacterium katG \ 2021 Bacterium
RPB0114 katG RPA R1 ACCTCGCAGCCGTGGTGGCCCGCCGACTAC Mycobacterium katG \ 2021 Bacterium
RPB0115 inhA RPA F2 ACGAGCGTAACCCCAGTGCGAAAGTTCCCG Mycobacterium inhA \ 2021 Bacterium
RPB0115 inhA RPA R3 GAGCGCGCTGATCCCAGCCCTCCTCGAGCA Mycobacterium inhA \ 2021 Bacterium
RPB0116 Forward 4 (F4) AACACCCCGGCGTTCGAGTGGTACTACCAGTC Mycobacterium Ag85B X62398 2021 Bacterium
RPB0116 Reverse 4 (R4) ACTTGTAAGTCTGGCAGCCAGCCTTACCGCA Mycobacterium Ag85B X62398 2021 Bacterium
RPB0116 Probe ACTGTCGATAGTCATGCCGGTCGGCGGGCAG[FAM-dT]CC[THF]GC[BHQ1-dT]TCTACAGCGACTGG[phosphate] Mycobacterium Ag85B X62398 2021 Bacterium
RPB0117 RPA-F1 CCAAGCTGCGCCAGGGCAGCTATTTCCCGGAC Mycobacterium IS1081 \ 2020 Bacterium
RPB0117 RPA-R1 TTGGCCATGATCGACACTTGCGACTTGGA Mycobacterium IS1081 \ 2020 Bacterium
RPB0118 Mu_RPA F1 ATGCATCGCATCCACAGTGACCAGCCACCG Mycobacterium ulcerans IS2404 CP000325.1 2019 Bacterium
RPB0118 Mu_RPA R2 TTGGTGCCGATCGCGTTGGACGGCAAGATG Mycobacterium ulcerans IS2404 CP000325.1 2019 Bacterium
RPB0118 Mu_RPA P GTAGGCGAACACCGACACGAGATGCGTGGCQTFCGCTTTGGCGCGTA–PH Mycobacterium ulcerans IS2404 CP000325.1 2019 Bacterium
RPB0119 IS6110F RPA TCAGTGAGGTCGCCCGTCTACTTGGTGTTG Mycobacterium tuberculosis IS6110 \ 2019 Bacterium
RPB0119 IS6110R RPA TGGACGCGGCTGATGTGCTCCTTGAGTTC Mycobacterium tuberculosis IS6110 \ 2019 Bacterium
RPB0120 IS1081F RPA CCTCTTCTCATCTTATCGACGCCGAGCAGC Mycobacterium tuberculosis IS1081 \ 2019 Bacterium
RPB0120 IS1081R RPA CTGATTGGACCGCTCATCGCTGCGTTCGC Mycobacterium tuberculosis IS1081 \ 2019 Bacterium
RPB0121 RPA IS6110 Forward TCCAGCGCCGCTTCGGACCACCAGCACCTAAC Mycobacterium tuberculosis IS6110 \ 2018 Bacterium
RPB0121 RPA IS6110 Reverse CGACGTAGGCGTCGGTGACAAAGGCCACGTAG Mycobacterium tuberculosis IS6110 \ 2018 Bacterium
RPB0122 RPA MDR Forward AACCGGTAAGGACCCGATCA Mycobacterium tuberculosis katG \ 2018 Bacterium
RPB0122 RPA MDR Reverse ATAGATCGGATCCACCCGCA Mycobacterium tuberculosis katG \ 2018 Bacterium
RPB0123 IS900-F2 TCGTCGTTGGCCACCCGCTGCGAGAGCAAT Mycobacterium avium subsp. Paratuberculosis IS900 X16293.1 2018 Bacterium
RPB0123 IS900-R1 Biotin-ACTCGACCGCTAATTGAGAGATGCGATTG Mycobacterium avium subsp. Paratuberculosis IS900 X16293.1 2018 Bacterium
RPB0123 IS900-LF probe 1 FAM-CCACAACCACCTCCGTAACCGTCATTGTC[dSpacer]AGATCAACCCAGCAGAC-C3 Spacer Mycobacterium avium subsp. Paratuberculosis IS900 X16293.1 2018 Bacterium
RPB0124 F2 GTCGCGTCGAGCTGAAGAAGTAAGAAGTC Pseudomonas aeruginosa oprL gene Z50191.1 2023 Bacterium
RPB0124 R6 ATCTGCTGGAGCTGCATGAACAGTTCGCC Pseudomonas aeruginosa oprL gene Z50191.1 2023 Bacterium
RPB0125 F1-m3 ACTGATCTAGATGAAGATGGTTTAT Pseudomonas aeruginosa lasB CP011857.1 2021 Bacterium
RPB0125 R1-m Biotin-CAGTTCCACTTTGTCATTCTCGGTC Pseudomonas aeruginosa lasB CP011857.1 2021 Bacterium
RPB0125 Probe FITC-GATGAAGAAGGTTTCTACGCTTGTCCTGTT[THF]TTCGTTGCTATTAT-C3 Spacer Pseudomonas aeruginosa lasB CP011857.1 2021 Bacterium
RPB0126 RSV A-RPA-F GAGAAATTGAACAACCTATTGGAAGGGAATG RSV A \ \ 2022 Virus
RPB0126 RSV A-RPA-R GTCTTCTGTTGGTATTGTGTGTTGATGTGA RSV A \ \ 2022 Virus
RPB0127 RSV B-RPA-F TAATCCAACTTCCAAAAAATTGAGTGACTTG RSV B \ \ 2022 Virus
RPB0127 RSV B-RPA-R TGTTTTATTGATGTTGTTGATTGCTGAGTG RSV B \ \ 2022 Virus
RPB0128 forward primer FITC-TCCYARTTGTATAGCATTCATAGGTGAAGGAG RSV conserved L gene \ 2020 Virus
RPB0128 reverse primer Biotin-TTGCATCTGTAGCAGGAATGGTYAAATTYTCA RSV conserved L gene \ 2020 Virus