Primers

PrimerBankID Primer Name Sequence(5'-3') Target Pathogen Target Gene GenBank Year of Publication Pathogen type
RPB0075 N gene F8 CAATCCTGCTAACAATGCTGCAATCGTGCTA SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene F9 CACCAAAAGATCACATTGGCACCCGCAATCC SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene F10 CTGAGGGAGCCTTGAATACACCAAAAGTCACA SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R1 TGGAGTTGAATTTCTTGAACTGTTGCGACT SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R2 CTTCCTTGCCTGTTGAGTGAGAGCGGTGA SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R3 CTTGGACTGAGATCTTTCATTTTACCGTCA SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R4 GCAGGATTGCGGGTGCCAATGTGATCTTTT SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R5 TGGCCTGTTGTTGTTGGCCTTTACCAGAC SARS-CoV-2 N gene \ 2020 Virus
RPB0075 N gene R6 TTGAGTCAGCACTGCTCATGGATTGTTGCA SARS-CoV-2 N gene \ 2020 Virus
RPB0076 Fwd primer T*T*T*T*T*T*TAACATCACTAGGTTTCAAACTTTACTTGC SARS-CoV-2 \ \ 2020 Virus
RPB0076 Rev primer CCAACCTGAAGAAGAATCACCAGGAGTCAA SARS-CoV-2 \ \ 2020 Virus
RPB0076 LFD probe T*T*T*T*T*T*T/iFluorT/TTTTTTTTTTTTTAGGAGTCAAATAACTT/3ddC/ SARS-CoV-2 \ \ 2020 Virus
RPB0077 ORF1ab-F CCCTGTGGGTTTTACACTTAA SARS-CoV-2 ORF1ab and N gene \ 2020 Virus
RPB0077 ORF1ab-R ACGATTGTGCATCAGCTGA SARS-CoV-2 ORF1ab and N gene \ 2020 Virus
RPB0078 N-F GGGGAACTTCTCCTGCTAGAAT SARS-CoV-2 N gene \ 2020 Virus
RPB0078 N-R AGACATTTTGCTCTCAAGCTG SARS-CoV-2 N gene \ 2020 Virus
RPB0079 RPA-SARS-2-FW CCTCTTCTCGTTCCTCATCACGTAGTCGCAAC SARS-CoV-2 N gene \ 2020 Virus
RPB0079 RPA-SARS-2-RV AGTGACAGTTTGGCCTTGTTGTTGTTGGCCTT SARS-CoV-2 N gene \ 2020 Virus
RPB0079 RPA-SARS-2-P CCTGCTAGAATGGCTGGCAATGGCGGTGAT(AP site)CTGCTCTTGCTTTGC SARS-CoV-2 N gene \ 2020 Virus
RPB0080 blaOXA-51-F3 GTTATCCAACAAGGCCAAACTCAACAAAGCT Acinetobacter baumannii bla OXA-51 CP043953.1 2022 Bacterium
RPB0080 blaOXA-51-R2B Biotin-AAATACTTCTGTGGTGGTTGCCTTATGGTGC Acinetobacter baumannii bla OXA-51 CP043953.1 2022 Bacterium
RPB0080 blaOXA-51-P FITC-AGCTATGGTAATGATCTTGCTCGTGCTTCGA[THF]CGAGGATGTAGCTGCT-C3 Spacer Acinetobacter baumannii bla OXA-51 CP043953.1 2022 Bacterium
RPB0081 blaOXA-23-F3 TGGTTCTCCAATCCGATCAGGGCATTCAACATT Acinetobacter baumannii bla OXA-23 NG_049525.1 2022 Bacterium
RPB0081 blaOXA-23-R2B Biotin-TTTACTTGCTATGTGGTTGCTTCTCTTTTTCTTTC Acinetobacter baumannii bla OXA-23 NG_049525.1 2022 Bacterium
RPB0081 blaOXA-23-P FITC-CTTGTACAATCTGACTCGAGGTTTCATTTA[THF]TACACTATGCTGTGC-C3 Spacer Acinetobacter baumannii bla OXA-23 NG_049525.1 2022 Bacterium
RPB0082 bla OXA-51-F2 ACATGACCCTAGGCGATGCCATGAAAGCTTCCGC Acinetobacter baumannii blaOXA-51 KJ584925.1 2020 Bacterium
RPB0082 bla OXA-51-R2 CTTGTAAGCAAACTGTGCCTCTTGCTGAGG Acinetobacter baumannii blaOXA-51 KJ584925.1 2020 Bacterium
RPB0082 bla OXA-51-P AAGCGTGTTGGTTATGGCAATGCAGATA[FAM-dT]C[THF]G[BHQ-dT]ACCCAAGTCGATA[C3-spacer] Acinetobacter baumannii blaOXA-51 KJ584925.1 2020 Bacterium
RPB0083 bla OXA-23-F GCAGTCCCAGTCTATCAGGAACTTGCGCGACG Acinetobacter baumannii bla OXA-23 NC_025109.1 2020 Bacterium
RPB0083 bla OXA-23-R GGCGTAACCTTTAATGGTCCTACCAACCAG Acinetobacter baumannii bla OXA-23 NC_025109.1 2020 Bacterium
RPB0083 bla OXA-23-P ATGCAAAAAGAAGTAAAACGTATTGGTT[FAM-dT]C[THF]G[BHQ-dT]AATGCTGAAATTG[C3-spacer] Acinetobacter baumannii bla OXA-23 NC_025109.1 2020 Bacterium
RPB0084 forward primer TAATACGACTCACTATAGGGGGTCCAACCTCCCACCCGTGTCTATC Aspergillus fumigatus \ \ 2022 Fungus
RPB0084 reverse primer TCGATGATTCACTGAATTCTGCAATTCACATTAC Aspergillus fumigatus \ \ 2022 Fungus
RPB0085 RT-RPA-F [Biotin]GGAGTTGTAGAGGTRAAGGACTCGGGYACTA Coxsackievirus A6 VP1 gene \ 2021 Viruses
RPB0085 RT-RPA-R TCCGGCTTAGGGGCYCCTGGTGGYACATACAT Coxsackievirus A6 VP1 gene \ 2021 Viruses
RPB0085 RT-RPA-P [FAM]AGGTTGGACACAAAAGTGAACTCRGCATCAA[dSpacer]GCGCATGTATGTTGA[C3-spacer] Coxsackievirus A6 VP1 gene \ 2021 Viruses
RPB0086 CbF399 AAGGGCAATCCCGAGGGAAGTCTTAAATGA Coxiella burnetii  23S rRNA gene AE016828 2018 Bacterium
RPB0086 CbR564 Biotin-CATACCATGGCTCTAAATGTAAATACATAA Coxiella burnetii  23S rRNA gene AE016828 2018 Bacterium
RPB0086 Cbprobe408 FAM-CCCGAGGGAAGTCTTAAATGACCCCGTAAC-[THF]-ACTGATCCGAAAGGT-PO4 Coxiella burnetii  23S rRNA gene AE016828 2018 Bacterium
RPB0087 EV71-F1 TGCCATTCATGTCACCTGCGAGTGCTTATC EV-A71 VP1 gene GQ279370.1 2018 Virus
RPB0087 EV71-R1 CCTGACGTGCTTCATTCTCATGTAAATCCTAA EV-A71 VP1 gene GQ279370.1 2018 Virus
RPB0087 EV71-TPR1 CCCACAGTCCGCACTGAGAACGTGCCCA-[FAM-dT]-C-[THF][BHQ1-dT]-GTTATTAGGACATGC-[C3-spacer] EV-A71 VP1 gene GQ279370.1 2018 Virus
RPB0088 HAdV-UniF ACATCGCCGGACAGGATGCTTCGGAGTACC HAdV \ \ 2021 Virus
RPB0088 HAdV-UniR3/7 Biotin-GGCCATGTCAAGCACTCTGTTGTCGCCTAC HAdV \ \ 2021 Virus
RPB0088 HAdV-UniR21/55 Biotin-GGCCATATCCAGCACTCTGTTGTCGCCCAC HAdV \ \ 2021 Virus
RPB0088 HAdV-UniP3/7 FAM-GGTCTGGTGCAGTTCGCCCGTGCAACAGAC-[THF]-CCTACTTCAGTATGG-PO4 HAdV \ \ 2021 Virus
RPB0088 HAdV-UniP21/55 FAM-GGTCTGGTGCAGTTCGCCCGCGCCACAGAC-[THF]-CCTACTTCAATCTGG-PO4 HAdV \ \ 2021 Virus
RPB0089 HAdV3-F3 GCCATATTCCGGCACAGCTTACAATTCACT HAdV \ AB330084.1 2021 Virus
RPB0089 HAdV3-R1 Biotin-TTCTTCTCCAACTTGAGGCTCTGGCTGATA HAdV \ AB330084.1 2021 Virus
RPB0089 HAdV3-Probe FAM-ATAGTTACAACGAATCGAGACAATGCAGTA-[THF]-CTACCACCACAAACA-PO4 HAdV \ AB330084.1 2021 Virus