Primers

PrimerBankID Primer Name Sequence(5'-3') Target Pathogen Target Gene GenBank Year of Publication Pathogen type
RPB0020 R ACGCCTTGTCCTCGAGGGAATTTAAGGTCT SARS-CoV-2 N \ 2023 virus
RPB0021 F AACTAATCAGACAAGGAACTGATTACAAAC SARS-CoV-2 N NC_045512.2 2023 virus
RPB0021 R CTTATTCAGCAAAATGACTTGATCTTTGAA SARS-CoV-2 N NC_045512.2 2023 virus
RPB0021 P GCTTCAGCGTTCTTCGGAATGTCGCGCAT/i6FAMdT/GG/idSp/A/iBHQ1dT/GGAAGTCACACCTTCGGG/iSpC3/ SARS-CoV-2 N NC_045512.2 2023 virus
RPB0022 F GAAGCGACAACAATTAGTTTTTAGGAATTTA SARS-CoV-2 E NC_045512.2 2023 virus
RPB0022 R CTAAAGGATTTTGTGACTTAAAAGGTAAGTAT SARS-CoV-2 E NC_045512.2 2023 virus
RPB0022 P GCGGTATGTGGAAAGGTTATGGCTGTAGT/i6FAMdT/G/idSp/GA/iBHQ1dT/CAACTCCGCGAAC SARS-CoV-2 E NC_045512.2 2023 virus
RPB0023 F TAGTTAATAGCGTACTTCTTTTTCTTGCTT SARS-CoV-2 ORF1ab NC_045512.2 2023 virus
RPB0023 R GAATTCAGATTTTTAACACGAGAGTAAACG SARS-CoV-2 ORF1ab NC_045512.2 2023 virus
RPB0023 P CACTAGCCATCCTTACTGCGCTTCGATTGTG/i6FAMdT/G/idSp/G/iBHQ1dT/ACTGCTGCAATATTGTT/iSpC3/ SARS-CoV-2 ORF1ab NC_045512.2 2023 virus
RPB0024 F CTGACTAAGGGAATTTTAGGATTTGTGTTC Influenza A virus (H1N1) M NC_026431.1 2023 virus
RPB0024 R GTATAGTTTAACTGCTCTATCCATGTTGTT Influenza A virus (H1N1) M NC_026431.1 2023 virus
RPB0024 P CCCTAAATGGGAATGGGGACCCGAACAACA[i6ROXdT]G[iBHQ1dT]A[idSp]AGAGCAGTTAAACTA[iSpC3] Influenza A virus (H1N1) M NC_026431.1 2023 virus
RPB0025 F GACACTAAAATAGATCTCTGGTCATACAAC Influenza A virus (H3N2) HA NC_026433.1 2023 virus
RPB0025 R CATCTCTGTATACATCATGGTCATAAGTTC Influenza A virus (H3N2) HA NC_026433.1 2023 virus
RPB0025 P GCCCTGGAGAACCAACATACAATTGATCTAAC[i6ROXdT]G[idSp]C[iBHQ1dT]CAGAAATGAACA[iSpC3] Influenza A virus (H3N2) HA NC_026433.1 2023 virus
RPB0026 F TATTAAATGAAAGCAATGCTAGTATGGGAA Influenza B virus PA NC_002206.1 2023 virus
RPB0026 R ATTTCATTTGGATTTTGTTTGTACCATTCA Influenza B virus PA NC_002206.1 2023 virus
RPB0026 P CACGGATGTTGTAACAGTTGTGACTT[i6CY3dT]CG[idSp]G[iBHQ1dT]TTAGTAGTACAGATCCTAG[iSpC3] Influenza B virus PA NC_002206.1 2023 virus
RPB0027 F TATGTGGAAAGGTTATGGCTGTAGTTGTGAT SARS-CoV-2 ORF1ab MN908947.3 2023 virus
RPB0027 R Bio-T*T*A*T*C*ATTGTAGATGTCAAAAGCCCTGTAT(*:phosphorothioate) SARS-CoV-2 ORF1ab MN908947.3 2023 virus
RPB0028 F CAAAAGATCACATTGGCACCCGCAATCCTG SARS-CoV-2 N MN908947.3 2023 virus
RPB0028 R Bio-T*C*T*T*G*AACTGTTGCGACTACGTGATGAGGAA(*:phosphorothioate) SARS-CoV-2 N MN908947.3 2023 virus
RPB0029 F ATGAGTCTTCTAACCGAGGTCGAAACGTAC Influenza A virus (H1N1) M1 \ 2023 virus
RPB0029 R Bio-G*G*T*G*A*GCGTGAACACAAATCCTAAAATCCC(*:phosphorothioate) Influenza A virus (H1N1) M1 \ 2023 virus
RPB0030 F CTAACAATCTTGATTCTAAGGTTGGTGG SARS-CoV-2 S(containing the L452R mutation site) NC_045512.2 2022 virus
RPB0030 R CTCTCTCAAAAGGTTTGAGATTAGA SARS-CoV-2 S(containing the L452R mutation site) NC_045512.2 2022 virus
RPB0031 F GCCATTTGTCATGATGGAAAAGCACACTTTCCT SARS-CoV-2 S NC_045512.2 2022 virus
RPB0031 R CTCATTGAGGCGGTCAATTTCTTTTTGAATGTT SARS-CoV-2 S NC_045512.2 2022 virus
RPB0032 F CTTGAAATTCCACGTAGGAATGTGGCAACTTTAC SARS-CoV-2 ORF1ab NC-045512.2 2022 virus
RPB0032 R GTATGCCAGGTATGTCAACACATAAACCTTCAG SARS-CoV-2 ORF1ab NC-045512.2 2022 virus
RPB0033 F TACACCGGAAGCCAATATGGATCAAGAATC SARS-CoV-2 ORF1ab \ 2022 virus
RPB0033 R CATTAGCACAAGTTGTAGGTATTTGTACATAC SARS-CoV-2 ORF1ab \ 2022 virus
RPB0034 F TAATACGACTCACTATAGGGGAACTTCTCCTGCTAGAATGGCTGGCA SARS-CoV-2 N \ 2022 virus
RPB0034 R CAGACATTTTGCTCTCAAGCTGGTTCAATC SARS-CoV-2 N \ 2022 virus
RPB0035 F Digoxin-CCACTGAGAAGTCTAACATAATAAGAGGCTG SARS-CoV-2 S \ 2022 virus
RPB0035 R Biotin-AATAAACTCTGAACTCACTTTCCATCCAACT SARS-CoV-2 S \ 2022 virus
RPB0036 OF TGTAGTTGTGATCAACTCCGCGAACCCATGCT SARS-CoV-2 ORF1ab NC_045512.2 2022 virus
RPB0036 OR TCTTCATGTTGGTAGTTAGAGAAAGTGTGTCT SARS-CoV-2 ORF1ab NC_045512.2 2022 virus
RPB0036 F TCAGTCAGCTGATGCACAATCGTTTTTAAACG SARS-CoV-2 ORF1ab NC_045512.2 2022 virus
RPB0036 R CTTGGAAGCGACAACAATTAGTTTTTAGGA SARS-CoV-2 ORF1ab NC_045512.2 2022 virus
RPB0036 P AGCCCGTCTTACACCGTGCGGCACAGGCAC/i6FAMdT/idSp/G/iBHQ1dT/ACTGATGTCGTAT/C3 spacer SARS-CoV-2 ORF1ab NC_045512.2 2022 virus
RPB0037 F GAAATATACTACGACGACTGATCACATACTACTTCTGTTTACATAGA SARS-CoV-2 S \ 2022 virus
RPB0037 R TCCTAGGTTGAAGATAACCCACATAATAAG SARS-CoV-2 S \ 2022 virus
RPB0038 F GAATAATATACGACTACGGAGGAGTGTGAGATAGACATATACTAAAC SARS-CoV-2 ORF1ab \ 2022 virus
RPB0038 R TAGTAAGACTAGAATTGTCTACATAAGCAGC SARS-CoV-2 ORF1ab \ 2022 virus
RPB0039 COR12 RT-RPA FP AACTTCCACATTGAGGGGACTGGAGGCAA MERS-CoV NC gene JX869059 2013 Virus
RPB0039 COR12 RT-RPA RP AGAGTTTCCTGATCTTGAACCTTGTGAACT MERS-CoV NC gene JX869059 2013 Virus
RPB0039 COR12 RT-RPA P TCTTCAAGAGCCTCTAGCTTAAGCAGAAAC-BTF-TCCAGATCTAGTTC-P MERS-CoV NC gene JX869059 2013 Virus
RPB0040 N-F CCAAGGTTTACCCAATAATACTGCGTCT MERS-CoV N gene \ 2023 Virus